Differences between revisions 2 and 3
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| * -n loop over input | * -e enable expression |
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| * -l strip newlines on input, but print them out with output | * -n loop over input |
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| * -a enable autosplit, resulting in array @F |
* -l strip newlines on input, but print them out with output * -a enable autosplit, resulting in array @F For example, say you have a tab delimited file of oligo sequences, with id in the 4th column, and sequence in the 5th column, and you want to convert it to a fasta file: {{{ perl -nale 'print ">$F[3]\n$F[4]"' inputfile.txt }}} |
Perl One Liners
- -e enable expression
- -n loop over input
- -l strip newlines on input, but print them out with output
- -a enable autosplit, resulting in array @F
For example, say you have a tab delimited file of oligo sequences, with id in the 4th column, and sequence in the 5th column, and you want to convert it to a fasta file:
perl -nale 'print ">$F[3]\n$F[4]"' inputfile.txt