Notes on using SNP Scanner software from Princeton

Software is available here:

August 2008

Affy CEL file types

SNPScanner depends on version 3 ascii CEL files. Modern Affy systems (2008) using Command Console produce version 4 CEL files. However, there are two types of version 4 CEL files. Affy provides two utilities for converting CEL files. The windows utility: cellfileconversiontool.exe will not convert version 4 files produced by Command Console to version 3, however the Affy Power Tools suite has a conversion utility that will interconvert all three file types.

SNPScanner (last edited 2008-08-27 16:42:52 by ChrisSeidel)