References for Solexa sequencing technology

Platform Comparison

• Application of Affymetrix array and Massively Parallel Signature Sequencing for identification of genes involved in prostate cancer progression. Oudes AJ, Roach JC, Walashek LS, Eichner LJ, True LD, Vessella RL, Liu AY. (2005) BMC Cancer. 5:86. PMID:16042785

  • Comparison of Affy with MPSS (Lynx). MPSS gene expression counted anything with 1 or more tags at 3' ends of known transcripts. Tags were summed for a locus (Gene ID).

• A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. (2007) Chen J, Agrawal V, Rattray M, West MA, St Clair DA, Michelmore RW, Coughlan SJ, Meyers BC. BMC Genomics. 8:414. PMID:17997849

• The use of MPSS for whole-genome transcriptional analysis in Arabidopsis. (2004) Meyers BC, Tej SS, Vu TH, Haudenschild CD, Agrawal V, Edberg SB, Ghazal H, Decola S. Genome Res. 14(8):1641-53. PMID:15289482

• Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing. (2004) Meyers BC, Vu TH, Tej SS, Ghazal H, Matvienko M, Agrawal V, Ning J, Haudenschild CD. Nat Biotechnol. (8):1006-11. PMID:15247925

• Analysis of tag-position bias in MPSS technology. (2006) Chen J, Rattray M. BMC Genomics. 7:77. PMID: 16603069